We described the above-ground plant species composition and measured a range of soil physico-chemical properties and the composition and size of the soil seed bank in the remnant natural vegetations on the flood plains of the Han River within Seoul, South Korea. We used analysis of variance and multivariate analyses to analyse the data and Sorensen`s similarity index to compare the composition of the vegetation and seed banks. The soils were circum-neutral and composed of mainly sand and silt fractions with a very limited clay component; a gradient based on sand/clay proportions was identified. The soil seed banks varied markedly between- and within-sites and had much greater species diversity than the above-ground vegetation. Two of the major dominants in the vegetation (Miscanthus saccariflorus and Phragmites australis) were found at very low densities in the seed bank. The site differences appeared to be correlated with the sand-clay gradient, suggesting that the soil properties differentially affected seed inputs into the soil, or that the processes than controlled sediment deposition during floods was also important in differentially affecting seed deposition. Lastly, there was relatively little similarity between the vegetation, dominated mainly by perennials, and the seed bank which contained a relatively large proportion of annuals and biennials. This result suggests that after disturbance caused by flooding there is the potential for many other species to colonize. This may impinge on the regeneration potential of the sites and cause concern for the future conservation of these important remnants of natural vegetation.